Index

_

__array__() (sima.ROI.ROI method) (sima.Sequence method) __getitem__() (sima.Sequence method)

__iter__() (sima.Sequence method) _segment() (sima.segment.SegmentationStrategy method)

A

add_ROIs() (sima.ImagingDataset method) AffinityMatrixCA1PC (class in sima.segment) AffinityMatrixMethod (class in sima.segment)

append() (sima.segment.SegmentationStrategy method) apply() (sima.segment.MergeOverlapping method) (sima.segment.PostProcessingStep method)

B

BasicAffinityMatrix (class in sima.segment)

C

calculate() (sima.segment.AffinityMatrixMethod method) CircularityFilter (class in sima.segment) coords (sima.ROI.ROI attribute)

correct() (sima.motion.MotionEstimationStrategy method) create() (sima.Sequence class method)

D

delete_ROIs() (sima.ImagingDataset method)

DiscreteFourier2D (class in sima.motion)

E

estimate() (sima.motion.MotionEstimationStrategy method) export() (sima.Sequence method) export_averages() (sima.ImagingDataset method)

export_frames() (sima.ImagingDataset method) export_signals() (sima.ImagingDataset method) extract() (sima.imaging.ImagingDataset method) (sima.ImagingDataset method)

F

frame_shape (ImagingDataset attribute)

H

HiddenMarkov2D (class in sima.motion)

HiddenMarkov3D (class in sima.motion)

I

id (sima.ROI.ROI attribute) im_shape (sima.ROI.ROI attribute) ImagingDataset (class in sima)

import_transformed_ROIs() (sima.ImagingDataset method) infer_spikes() (sima.ImagingDataset method)

J

join() (sima.Sequence static method)

L

label (sima.ROI.ROI attribute)

load() (sima.ImagingDataset class method) (sima.ROI.ROIList class method)

M

mask (sima.ROI.ROI attribute) mask() (sima.Sequence method)

MergeOverlapping (class in sima.segment) MotionEstimationStrategy (class in sima.motion)

N

num_frames (ImagingDataset attribute)

num_sequences (ImagingDataset attribute)

P

PlaneCA1PC (class in sima.segment) PlaneNormalizedCuts (class in sima.segment) PlaneTranslation2D (class in sima.motion)

PlaneWiseSegmentation (class in sima.segment) polygons (sima.ROI.ROI attribute) PostProcessingStep (class in sima.segment)

R

ResonantCorrection (class in sima.motion) ROI (class in sima.ROI) ROIFilter (class in sima.segment)

ROIList (class in sima.ROI) ROIs (ImagingDataset attribute)

S

save() (sima.ImagingDataset method) (sima.ROI.ROIList method) segment() (sima.imaging.ImagingDataset method) (sima.ImagingDataset method) (sima.segment.SegmentationStrategy method) SegmentationStrategy (class in sima.segment) Sequence (class in sima) shape (Sequence attribute) signals() (sima.ImagingDataset method) sima.extract (module)

sima.ROI (module) size (sima.ROI.ROI attribute) SmoothROIBoundaries (class in sima.segment) SparseROIsFromMasks (class in sima.segment) STICA (class in sima.segment) subset() (sima.ROI.ROIList method)

T

tags (sima.ROI.ROI attribute) time_averages (ImagingDataset attribute) time_kurtosis (ImagingDataset attribute) time_std (ImagingDataset attribute)

timestamp (sima.ROI.ROIList attribute) todict() (sima.ROI.ROI method) transform() (sima.ROI.ROIList method)

V

VolumeTranslation (class in sima.motion)